Writing flexible document outputs with Markdown syntax

ANU BDSI
workshop Reproducible research with Quarto

Emi Tanaka

Biological Data Science Institute

12th April 2024

Welcome 👋

Teaching team

Dr. Emi Tanaka

Jeremias Ivan

Audrey Prasetya

Nils Kreuter (TBA)

Workshop materials

All materials will be hosted at
https://anu-bdsi.github.io/workshop-intro-quarto/

Today’s learning objectives

  • Generate HTML, PDF, or Word documents using Markdown syntax
  • Understand the anatomy of Quarto documents
  • Develop dynamic documents containing code (in R, Python, or Julia) using Quarto
  • Implement various code chunk options to customize chunk behaviour
  • Recognize the significance of reproducibility and grasp the concept of literate programming
  • Apply reproducible practices
  • Establish an organized folder structure for data projects

Current learning objective

  • Generate HTML, PDF, or Word documents using Markdown syntax
  • Understand the anatomy of Quarto documents
  • -Develop dynamic documents containing code (in R, Python, or Julia) using Quarto
  • -Implement various code chunk options to customize chunk behaviour
  • -Recognize the significance of reproducibility and grasp the concept of literate programming
  • -Apply reproducible practices
  • -Establish an organized folder structure for data projects

anu-bdsi.github.io/workshop-intro-quarto/